PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi05g15880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 113aa    MW: 13317.7 Da    PI: 11.5854
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi05g15880.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-123075655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     +++Er RR ri +++ +L+el+P+      k  s  e+L +Av++Ik+Lq
  Vradi05g15880.1 30 SIAERVRRTRISERIRKLQELVPNM----EKQTSTTEMLDLAVDHIKNLQ 75
                     689*********************7....467*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5132474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-152683IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.39E-92877No hitNo description
Gene3DG3DSA:4.10.280.103.4E-132988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-93080IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-93075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF009572.8E-1044109IPR001388Synaptobrevin
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016192Biological Processvesicle-mediated transport
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MFSMDNLLQF NDSVPCKIRA KRGFATHPRS IAERVRRTRI SERIRKLQEL VPNMEKQTST  60
TEMLDLAVDH IKNLQNQFKA QDFRQQGTKI RRKMWFQNMK IKLIVLGCIA QR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150374e-43AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014492120.11e-51PREDICTED: transcription factor bHLH130-like
SwissprotQ66GR32e-38BH130_ARATH; Transcription factor bHLH130
TrEMBLV7CY233e-47V7CY23_PHAVU; Uncharacterized protein
STRINGGLYMA03G29750.41e-42(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.12e-29bHLH family protein